- Gaussian2D (Java class)
- Gaussian2DTest (Java class)
- Gaussian3D (Java class)
- Gaussian3DTest (Java class)
- generate3DFluorophoresGrid(int, Camera, FluorophoreProperties) (Java method)
- generate_signature_for_pixel(int, int, double) (Java method), [1]
- generateBackground() (Java method), [1], [2], [3]
- GenerateBackgroundFromFile (Java class)
- GenerateBackgroundFromFileTest (Java class)
- GenerateBackgroundFromFileTest() (Java constructor)
- GenerateFiducialsRandom2D (Java class)
- generateFluorophores() (Java method), [1], [2], [3], [4], [5]
- GenerateFluorophoresFromCSV (Java class)
- generateFluorophoresFromCSV(File, Camera, PSFBuilder, FluorophoreDynamics, boolean) (Java method)
- generateFluorophoresFromCSV(File, Camera, PSFBuilder, FluorophoreProperties, boolean) (Java method)
- generateFluorophoresGrid(int, Camera, FluorophoreProperties) (Java method)
- GenerateFluorophoresGrid2D (Java class)
- generateFluorophoresGrid2D(int, Camera, PSFBuilder, FluorophoreDynamics) (Java method)
- generateFluorophoresGrid2D(int, Camera, PSFBuilder, FluorophoreProperties) (Java method)
- GenerateFluorophoresGrid3D (Java class)
- generateFluorophoresGrid3D(int, double, double, Camera, PSFBuilder, FluorophoreDynamics) (Java method)
- generateFluorophoresGrid3D(int, double, double, Camera, PSFBuilder, FluorophoreProperties) (Java method)
- generateFluorophoresRandom(int, Camera, FluorophoreProperties) (Java method)
- GenerateFluorophoresRandom2D (Java class)
- generateFluorophoresRandom2D(int, Camera, PSFBuilder, FluorophoreDynamics) (Java method)
- generateFluorophoresRandom2D(int, Camera, PSFBuilder, FluorophoreProperties) (Java method)
- GenerateFluorophoresRandom3D (Java class)
- generateFluorophoresRandom3D(int, double, double, Camera, PSFBuilder, FluorophoreDynamics) (Java method)
- generateFluorophoresRandom3D(int, double, double, Camera, PSFBuilder, FluorophoreProperties) (Java method)
- generateGoldBeadsRandom2D(int, double, Camera, Stage, PSFBuilder) (Java method)
- generateObstructors() (Java method), [1]
- generatePixelSignature(int, int) (Java method), [1], [2], [3]
- GenerateRandomBackground (Java class)
- GenerateRandomBackgroundTest (Java class)
- GenerateRandomBackgroundTest() (Java constructor)
- generateSignature(ArrayList) (Java method), [1], [2], [3]
- GenerateUniformBackground (Java class)
- get_pixels_within_radius(double, double) (Java method)
- getAduPerElectron() (Java method)
- getAnalyzerCurrentSelection() (Java method)
- getAnalyzerOutput() (Java method)
- getAsyncClient(org.apache.thrift.transport.TNonblockingTransport) (Java method)
- getBackgroundCurrentSelection() (Java method)
- getBackgroundRandomButtonText() (Java method)
- getBackgroundRandomFeatureSize() (Java method)
- getBackgroundRandomMaxValue() (Java method)
- getBackgroundRandomMinValue() (Java method)
- getBackgroundRandomSeed() (Java method)
- getBackgroundTifFile() (Java method)
- getBackgroundTifFileButtonText() (Java method)
- getBackgroundUniformButtonText() (Java method)
- getBackgroundUniformSignal() (Java method)
- getBaseline() (Java method)
- getBitDepth() (Java method), [1]
- getBrightness() (Java method)
- getCameraAduPerElectron() (Java method)
- getCameraBaseline() (Java method)
- getCameraDarkCurrent() (Java method)
- getCameraEmGain() (Java method)
- getCameraNX() (Java method)
- getCameraNY() (Java method)
- getCameraPixelSize() (Java method)
- getCameraQuantumEfficiency() (Java method)
- getCameraReadoutNoise() (Java method)
- getCameraThermalNoise() (Java method)
- getClient(org.apache.thrift.protocol.TProtocol) (Java method)
- getClient(org.apache.thrift.protocol.TProtocol, org.apache.thrift.protocol.TProtocol) (Java method)
- getConfigFile() (Java method)
- getControllerCurrentSelection() (Java method)
- getControllerOutput() (Java method)
- getControllerSetpoint() (Java method)
- getControllerTickrate() (Java method)
- getControlSignal() (Java method), [1], [2]
- getCustomParameters() (Java method), [1], [2]
- getDarkCurrent() (Java method)
- getElapsedTimes() (Java method)
- getEmGain() (Java method)
- getEmitters3DCheckBoxEnabled() (Java method)
- getEmitters3DMaxZ() (Java method)
- getEmitters3DMinZ() (Java method)
- getEmittersCsvFile() (Java method)
- getEmittersCsvFileButtonText() (Java method)
- getEmittersCurrentSelection() (Java method)
- getEmittersGridButtonText() (Java method)
- getEmittersGridSpacing() (Java method)
- getEmittersRandomButtonText() (Java method)
- getEmittersRandomNumber() (Java method)
- getEmptyArgsInstance() (Java method), [1], [2], [3], [4], [5], [6], [7]
- getEx() (Java method)
- getFiducialsNumber() (Java method)
- getFiducialsSignal() (Java method)
- getFieldValue(_Fields) (Java method), [1], [2], [3], [4], [5], [6], [7], [8]
- getFilename() (Java method), [1]
- getFluorophoreCurrentSelection() (Java method)
- getFluorophorePalmText() (Java method)
- getFluorophoreSignal() (Java method)
- getFluorophoreSimpleText() (Java method)
- getFluorophoreStormText() (Java method)
- getFluorophoreTBl() (Java method)
- getFluorophoreTOff() (Java method)
- getFluorophoreTOn() (Java method)
- getFluorophoreWavelength() (Java method)
- getFOVSize() (Java method), [1], [2]
- getFovSize() (Java method)
- getFOVsize_um() (Java method)
- getFrame() (Java method)
- getFrameInfo() (Java method)
- getFWHM() (Java method), [1]
- getGammaGenerator() (Java method)
- getGaussianGenerator() (Java method)
- getGeneratorTrueSignal() (Java method)
- getHeight() (Java method), [1]
- getId() (Java method), [1]
- getIds() (Java method), [1]
- getImageCount() (Java method), [1], [2]
- getInitialStates() (Java method)
- getInstance() (Java method), [1], [2]
- getInterpreter() (Java method)
- getLaserCurrentPower() (Java method)
- getLaserMaxPower() (Java method)
- getLaserMinPower() (Java method)
- getLaserPower() (Java method), [1]
- getLogCurrentFrameOnly() (Java method)
- getMag() (Java method)
- getMeanTransitionLifetime(int, int) (Java method)
- getMk() (Java method)
- getNA() (Java method)
- getNextImage (Java class), [1]
- getNextImage() (Java constructor), [1]
- getNextImage(org.apache.thrift.async.AsyncMethodCallback) (Java method), [1]
- getNextImage_args (Java class)
- getNextImage_args() (Java constructor)
- getNextImage_args(getNextImage_args) (Java constructor)
- getNextImage_call (Java class)
- getNextImage_call(org.apache.thrift.async.AsyncMethodCallback, org.apache.thrift.async.TAsyncClient, org.apache.thrift.protocol.TProtocolFactory, org.apache.thrift.transport.TNonblockingTransport) (Java constructor)
- getNextImage_result (Java class)
- getNextImage_result() (Java constructor)
- getNextImage_result(getNextImage_result) (Java constructor)
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- getNextImage_result(java.nio.ByteBuffer, ImageGenerationException) (Java constructor)
- getNextStates() (Java method)
- getNStates() (Java method)
- getNumericalAperture() (Java method)
- getNX() (Java method)
- getNY() (Java method)
- getObjectiveMag() (Java method)
- getObjectiveNa() (Java method)
- getObjectSpacePixelSize() (Java method), [1], [2], [3]
- getOnEmitterCount() (Java method), [1]
- getPalmKA() (Java method)
- getPalmKB() (Java method)
- getPalmKD1() (Java method)
- getPalmKD2() (Java method)
- getPalmKR1() (Java method)
- getPalmKR2() (Java method)
- getPalmSignal() (Java method)
- getPalmWavelength() (Java method)
- getPerformLogging() (Java method)
- getPixelData(int) (Java method), [1]
- getPixelList() (Java method)
- getPixelSize() (Java method)
- getPixelSizeUm() (Java method)
- getPixelsWithinRadius(Point2D, double) (Java method)
- getPoissonGenerator() (Java method)
- getPort() (Java method)
- getPortTextEnabled() (Java method)
- getPositionLogger() (Java method)
- getPower() (Java method), [1], [2]
- getPSF() (Java method)
- getPsfCurrentSelection() (Java method)
- getPsfGaussian2dText() (Java method)
- getPsfGaussian3dText() (Java method)
- getPsfGibsonLanniMaxRadius() (Java method)
- getPsfGibsonLanniNg() (Java method)
- getPsfGibsonLanniNg0() (Java method)
- getPsfGibsonLanniNi() (Java method)
- getPsfGibsonLanniNi0() (Java method)
- getPsfGibsonLanniNs() (Java method)
- getPsfGibsonLanniNumBasis() (Java method)
- getPsfGibsonLanniNumSamples() (Java method)
- getPsfGibsonLanniOversampling() (Java method)
- getPsfGibsonLanniResPsf() (Java method)
- getPsfGibsonLanniResPsfAxial() (Java method)
- getPsfGibsonLanniSizeX() (Java method)
- getPsfGibsonLanniSizeY() (Java method)
- getPsfGibsonLanniSolver() (Java method)
- getPsfGibsonLanniText() (Java method)
- getPsfGibsonLanniTg() (Java method)
- getPsfGibsonLanniTg0() (Java method)
- getPsfGibsonLanniTi0() (Java method)
- getQuantumEfficiency() (Java method)
- getRadius() (Java method), [1], [2], [3]
- getReadoutNoise() (Java method)
- getRes_X() (Java method)
- getRes_Y() (Java method)
- getResolution() (Java method), [1]
- getResult() (Java method), [1], [2], [3]
- getResult(I, getNextImage_args) (Java method)
- getResult(I, getServerStatus_args) (Java method)
- getResult(I, getSimulationState_args) (Java method)
- getResult(I, setActivationLaserPower_args) (Java method)
- getResultHandler(org.apache.thrift.server.AbstractNonblockingServer.AsyncFrameBuffer, int) (Java method), [1], [2], [3]
- getSelectConfigButtonEnabled() (Java method)
- getSelectedButtonText(ButtonGroup) (Java method)
- getServer() (Java method)
- getServerStatus (Java class), [1]
- getServerStatus() (Java constructor), [1]
- getServerStatus(org.apache.thrift.async.AsyncMethodCallback) (Java method), [1]
- getServerStatus_args (Java class)
- getServerStatus_args() (Java constructor)
- getServerStatus_args(getServerStatus_args) (Java constructor)
- getServerStatus_call (Java class)
- getServerStatus_call(org.apache.thrift.async.AsyncMethodCallback, org.apache.thrift.async.TAsyncClient, org.apache.thrift.protocol.TProtocolFactory, org.apache.thrift.transport.TNonblockingTransport) (Java constructor)
- getServerStatus_result (Java class)
- getServerStatus_result() (Java constructor)
- getServerStatus_result(getServerStatus_result) (Java constructor)
- getServerStatus_result(java.lang.String) (Java constructor)
- getShortTrueSignalDescription() (Java method), [1], [2]
- getSignal() (Java method)
- getSignature() (Java method)
- getSimulationModel() (Java method)
- getSimulationState (Java class), [1]
- getSimulationState() (Java constructor), [1]
- getSimulationState(org.apache.thrift.async.AsyncMethodCallback) (Java method), [1]
- getSimulationState_args (Java class)
- getSimulationState_args() (Java constructor)
- getSimulationState_args(getSimulationState_args) (Java constructor)
- getSimulationState_call (Java class)
- getSimulationState_call(org.apache.thrift.async.AsyncMethodCallback, org.apache.thrift.async.TAsyncClient, org.apache.thrift.protocol.TProtocolFactory, org.apache.thrift.transport.TNonblockingTransport) (Java constructor)
- getSimulationState_result (Java class)
- getSimulationState_result() (Java constructor)
- getSimulationState_result(getSimulationState_result) (Java constructor)
- getSimulationState_result(java.lang.String) (Java constructor)
- getSize() (Java method), [1]
- getSlice() (Java method), [1]
- getStack() (Java method), [1]
- getStageX() (Java method)
- getStageY() (Java method)
- getStageZ() (Java method)
- getStartButtonEnabled() (Java method)
- getStartingState() (Java method)
- getStateLogger() (Java method)
- getStateSystem() (Java method)
- getStatusFrame() (Java method)
- getStopButtonEnabled() (Java method)
- getStormKBl() (Java method)
- getStormKDark() (Java method)
- getStormKDarkRecovery() (Java method)
- getStormKDarkRecoveryConstant() (Java method)
- getStormKTriplet() (Java method)
- getStormKTripletRecovery() (Java method)
- getStormSignal() (Java method)
- getStormWavelength() (Java method)
- getSuccess() (Java method), [1], [2]
- getThermalNoise() (Java method)
- getTimeOn() (Java method)
- getTitle() (Java method), [1]
- getTransitionRate(int, int) (Java method)
- getTrueSignal(int) (Java method), [1], [2]
- getUniformGenerator() (Java method)
- getWavelength() (Java method), [1]
- getWidth() (Java method), [1]
- getX() (Java method), [1], [2]
- getY() (Java method), [1], [2]
- getZ() (Java method), [1], [2]
- GibsonLanniPSF (Java class)
- GibsonLanniPSFTest (Java class)
- GibsonLanniPSFTest() (Java constructor)
- GoldBead (Java class)
- GoldBead(Camera, double, double, double) (Java constructor)
- GoldBead(PSFBuilder, double, double, double, double) (Java constructor)
- GoldBeads (Java class)
- GoldBeads(int, Camera, double) (Java constructor)
- GUI (Java class)
- GUI() (Java constructor)
- GUI(String) (Java constructor)
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