.. java:import:: ch.epfl.leb.sass.models.components.internal DefaultObjective

.. java:import:: ch.epfl.leb.sass.models.components.internal DefaultStage

.. java:import:: ch.epfl.leb.sass.models.components.internal DefaultLaser

.. java:import:: ch.epfl.leb.sass.models.components.internal DefaultCamera

.. java:import:: ch.epfl.leb.sass IntegrationTest

.. java:import:: ch.epfl.leb.sass.models.psfs.internal Gaussian2D

.. java:import:: ch.epfl.leb.sass.models.photophysics.internal PalmDynamics

.. java:import:: ch.epfl.leb.sass.models.fluorophores.commands.internal GenerateFluorophoresGrid2D

.. java:import:: ch.epfl.leb.sass.models.obstructors.internal.commands GenerateFiducialsRandom2D

.. java:import:: ch.epfl.leb.sass.models.backgrounds.internal.commands GenerateUniformBackground

.. java:import:: ch.epfl.leb.sass.models.illuminations.internal SquareUniformIllumination

.. java:import:: ch.epfl.leb.sass.models.samples RefractiveIndex

.. java:import:: ch.epfl.leb.sass.models.samples.internal UniformRefractiveIndex

.. java:import:: ch.epfl.leb.sass.utils RNG

.. java:import:: com.google.gson JsonObject

.. java:import:: com.google.gson JsonArray

.. java:import:: org.apache.commons.math3.complex Complex

.. java:import:: org.apache.commons.math3.geometry.euclidean.threed Vector3D

.. java:import:: org.junit Test

.. java:import:: org.junit Before

.. java:import:: org.junit.experimental.categories Category

MicroscopeIT
============

.. java:package:: ch.epfl.leb.sass.models
   :noindex:

.. java:type:: @Category public class MicroscopeIT

   Integration tests for the Microscope class.

   :author: Kyle M. Douglass

   **See also:** :java:ref:`https://stackoverflow.com/questions/2606572/junit-splitting-integration-test-and-unit-tests`

Methods
-------
setUp
^^^^^

.. java:method:: @Before public void setUp()
   :outertype: MicroscopeIT

   Sets up a basic Microscope for an acquisition simulation.

testGetFluorophores
^^^^^^^^^^^^^^^^^^^

.. java:method:: @Test public void testGetFluorophores()
   :outertype: MicroscopeIT

   Test of getFluorophores method, of class Microscope.

testGetFovSize
^^^^^^^^^^^^^^

.. java:method:: @Test public void testGetFovSize()
   :outertype: MicroscopeIT

   Test of getFovSize method, of class Microscope.

testGetObjectSpacePixelSize
^^^^^^^^^^^^^^^^^^^^^^^^^^^

.. java:method:: @Test public void testGetObjectSpacePixelSize()
   :outertype: MicroscopeIT

   Test of getObjectSpacePixelSize method, of class Microscope.

testGetOnEmitterCount
^^^^^^^^^^^^^^^^^^^^^

.. java:method:: @Test public void testGetOnEmitterCount()
   :outertype: MicroscopeIT

   Test of getOnEmitterCount method, of class Microscope.

testGetResolution
^^^^^^^^^^^^^^^^^

.. java:method:: @Test public void testGetResolution()
   :outertype: MicroscopeIT

   Test of getResolution method, of class Microscope.

testGetSetLaserPower
^^^^^^^^^^^^^^^^^^^^

.. java:method:: @Test public void testGetSetLaserPower()
   :outertype: MicroscopeIT

   Test of setLaserPower and getLaserPower methods, of class Microscope.

testSimulateFrame
^^^^^^^^^^^^^^^^^

.. java:method:: @Test public void testSimulateFrame()
   :outertype: MicroscopeIT

   Test of simulateFrame method, of class Microscope.

testToJsonCamera
^^^^^^^^^^^^^^^^

.. java:method:: @Test public void testToJsonCamera()
   :outertype: MicroscopeIT

   Test of toJsonCamera method, of class Microscope.

testToJsonFluorescence
^^^^^^^^^^^^^^^^^^^^^^

.. java:method:: @Test public void testToJsonFluorescence()
   :outertype: MicroscopeIT

   Test of toJsonFluorescence method, of class Microscope.

testToJsonLaser
^^^^^^^^^^^^^^^

.. java:method:: @Test public void testToJsonLaser()
   :outertype: MicroscopeIT

   Test of toJsonLaser method, of class Microscope.

testToJsonObjective
^^^^^^^^^^^^^^^^^^^

.. java:method:: @Test public void testToJsonObjective()
   :outertype: MicroscopeIT

   Test of toJsonObjective method, of class Microscope.

testToJsonStage
^^^^^^^^^^^^^^^

.. java:method:: @Test public void testToJsonStage()
   :outertype: MicroscopeIT

   Test of toJsonStage method, of class Microscope.