.. java:import:: ch.epfl.leb.sass.simulator.internal ImageJSimulator

.. java:import:: ch.epfl.leb.sass.models Microscope

.. java:import:: ch.epfl.leb.alica.interfaces Analyzer

.. java:import:: ch.epfl.leb.alica.interfaces Controller

.. java:import:: ch.epfl.leb.sass.utils.images ImageS

.. java:import:: ch.epfl.leb.sass.utils.images ImageShapeException

.. java:import:: ij IJ

.. java:import:: java.util ArrayList

.. java:import:: java.util.logging Level

.. java:import:: java.util.logging Logger

App
===

.. java:package:: ch.epfl.leb.sass.ijplugin
   :noindex:

.. java:type:: public class App extends ImageJSimulator

   Backend for the FIJI plugin GUI

   :author: Marcel Stefko

Constructors
------------
App
^^^

.. java:constructor:: public App(Microscope microscope, Analyzer analyzer, Controller controller, int controller_tickrate) throws ImageShapeException
   :outertype: App

   Assemble the App from custom components.

   :param microscope: The microscope to be simulated.
   :param analyzer: An analyzer for processing images from the microscope.
   :param controller: A controller that adjusts the state of the microscope.

Methods
-------
getAnalyzerOutput
^^^^^^^^^^^^^^^^^

.. java:method:: public ArrayList<Double> getAnalyzerOutput()
   :outertype: App

getControllerOutput
^^^^^^^^^^^^^^^^^^^

.. java:method:: public ArrayList<Double> getControllerOutput()
   :outertype: App

getControllerSetpoint
^^^^^^^^^^^^^^^^^^^^^

.. java:method:: public ArrayList<Double> getControllerSetpoint()
   :outertype: App

getControllerTickrate
^^^^^^^^^^^^^^^^^^^^^

.. java:method:: public int getControllerTickrate()
   :outertype: App

getGeneratorTrueSignal
^^^^^^^^^^^^^^^^^^^^^^

.. java:method:: public ArrayList<Double> getGeneratorTrueSignal()
   :outertype: App

getStatusFrame
^^^^^^^^^^^^^^

.. java:method:: public SimulatorStatusFrame getStatusFrame()
   :outertype: App

   Return the handle for the status frame.

   :return: Plots with the simulation history.

setSetpoint
^^^^^^^^^^^

.. java:method:: public void setSetpoint(double value)
   :outertype: App

   Set new setpoint for the controller

   :param value: new setpoint value

startSimulating
^^^^^^^^^^^^^^^

.. java:method:: public void startSimulating()
   :outertype: App

   Start continuously generating new images until stopped.

stopSimulating
^^^^^^^^^^^^^^

.. java:method:: public void stopSimulating()
   :outertype: App

   Stop generating new images.